BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB031H11SP1|AL429488
(911 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig869 1582 0.0
3x_Contig1624 114 4e-25
3x_Contig1503 114 4e-25
3x_Contig1722 112 1e-24
3x_Contig1263 110 6e-24
>3x_Contig869
Length = 2873
Score = 1582 bits (792), Expect = 0.0
Identities = 823/834 (98%), Gaps = 3/834 (0%)
Strand = Plus / Plus
Query: 1 tgctgtaggactaggtgttaaaatgcatatcacgaggmctactctcagtgctgtcggtat 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1100 tgctgtaggactaggtgttaaaatgcatatcacgaggactactctcagtgctgtcggtat 1159
Query: 61 atttacatgcccgtcatgatccagttcatttcttagtatatmagayaccgtggcttaagt 120
|||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 1160 atttacatgcccgtaatgatccagttcatttcttagtatataagataccgtggcttaagt 1219
Query: 121 ttctactatcatttgttctagacaatccaatattagatcagtctcacgatatctctttct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1220 ttctactatcatttgttctagacaatccaatattagatcagtctcacgatatctctttct 1279
Query: 181 atcaaaggaattgcggtacattttagtccccttctttccataatatccgtggatctgatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1280 atcaaaggaattgcggtacattttagtccccttctttccataatatccgtggatctgatg 1339
Query: 241 amaccatatcttccttgatttgactgayagcttctctccatattttgttaatagttcaaa 300
| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1340 aaaccatatcttccttgatttgactgatagcttctctccatattttgttaatagttcaaa 1399
Query: 301 tactgcagtggtaaaamaatcttccgaactatatgatgttcgtttaacccattccggaca 360
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1400 tactgcagtggtaaaaaaatcttccgaactatatgatgttcgtttaacccattccggaca 1459
Query: 361 gaatttctgtggaccagttactgtccttgttcggaataamatttcctagccccgctagtt 420
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1460 gaatttctgtggaccagttactgtccttgttcggaataaaatttcctagccccgctagtt 1519
Query: 421 tcatttgtctaattaagcagtagatccatctgtcaaactagtactctgacttcactactt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1520 tcatttgtctaattaagcagtagatccatctgtcaaactagtactctgacttcactactt 1579
Query: 481 ctagataaacacgatgccttgtcttggaacccgggaaagctttgaaacctttatacggag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1580 ctagataaacacgatgccttgtcttggaacccgggaaagctttgaaacctttatacggag 1639
Query: 541 ttgcataatattccttttcctcattggtgattctggacatccaaatcacgtgataccaat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1640 ttgcataatattccttttcctcattggtgattctggacatccaaatcacgtgataccaat 1699
Query: 601 tcaaaaccttcagtatgtgatgaatccatatctcacagtatcttgtatcatctatcatta 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1700 tcaaaaccttcagtatgtgatgaatccatatctcacagtatcttgtatcatctatcatta 1759
Query: 661 atgcaaataggtaaataagtctaaacagggtctatgggcttatttacgcggggta-ccac 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1760 atgcaaataggtaaataagtctaaacagggtctatgggcttatttacgcggggtacccac 1819
Query: 720 ggcacaccgagttgactgggaaatcgctccacacgcaagcttcctctcggtagccaagtt 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1820 ggcacaccgagttgactgggaaatcgctccacacgcaagcttcctctcggtagccaagtt 1879
Query: 780 ggtttaaggcg-cagactgtaatttg-aaacacaaagcaatttgtaatctggag 831
||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1880 ggtttaaggcgccagactgtaatttgaaaacacaaagcaatttgtaatctggag 1933
>3x_Contig1624
Length = 12551
Score = 114 bits (57), Expect = 4e-25
Identities = 71/73 (97%), Gaps = 2/73 (2%)
Strand = Plus / Minus
Query: 761 tcctctcggtagccaagttggtttaaggcg-cagactgtaatttg-aaacacaaagcaat 818
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 6094 tcctctcggtagccaagttggtttaaggcgccagactgtaatttgaaaacacaaagcaat 6035
Query: 819 ttgtaatctggag 831
|||||||||||||
Sbjct: 6034 ttgtaatctggag 6022
>3x_Contig1503
Length = 10719
Score = 114 bits (57), Expect = 4e-25
Identities = 71/73 (97%), Gaps = 2/73 (2%)
Strand = Plus / Minus
Query: 761 tcctctcggtagccaagttggtttaaggcg-cagactgtaatttg-aaacacaaagcaat 818
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 3592 tcctctcggtagccaagttggtttaaggcgccagactgtaatttgaaaacacaaagcaat 3533
Query: 819 ttgtaatctggag 831
|||||||||||||
Sbjct: 3532 ttgtaatctggag 3520
>3x_Contig1722
Length = 17718
Score = 112 bits (56), Expect = 1e-24
Identities = 70/72 (97%), Gaps = 2/72 (2%)
Strand = Plus / Minus
Query: 762 cctctcggtagccaagttggtttaaggcg-cagactgtaatttg-aaacacaaagcaatt 819
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 5777 cctctcggtagccaagttggtttaaggcgccagactgtaatttgaaaacacaaagcaatt 5718
Query: 820 tgtaatctggag 831
||||||||||||
Sbjct: 5717 tgtaatctggag 5706
>3x_Contig1263
Length = 6840
Score = 110 bits (55), Expect = 6e-24
Identities = 69/71 (97%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 763 ctctcggtagccaagttggtttaaggcg-cagactgtaatttg-aaacacaaagcaattt 820
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 5478 ctctcggtagccaagttggtttaaggcgccagactgtaatttgaaaacacaaagcaattt 5537
Query: 821 gtaatctggag 831
|||||||||||
Sbjct: 5538 gtaatctggag 5548
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.712 1.32
Gapped
Lambda K H
1.38 0.712 1.32
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6000
Number of Sequences: 1807
Number of extensions: 6000
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 5
length of query: 911
length of database: 10,358,551
effective HSP length: 16
effective length of query: 895
effective length of database: 10,329,639
effective search space: 9245026905
effective search space used: 9245026905
T: 0
A: 40
X1: 6 (12.0 bits)
X2: 15 (30.0 bits)
S1: 12 (24.5 bits)
S2: 50 (100.3 bits)